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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148186568_148191916_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148186568 - 148191916
Intron Length:
5349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTGTTTCAACA
Flanking Amino Acid:
PNAASSLPSQKENAVRDETV
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.2
0.52
0.9
70.5
40.9
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
50.1
0
1.6
59.24
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031068
148186524 - 148244055
57532
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152