About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148192756_148193960_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148192756 - 148193960
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
TAATCTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTATTTAATC
Flanking Amino Acid:
VVIMGKRAMQSVVDDWVEAY
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.8
0.47
1
62.4
43.7
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
69.7
0.6
1.4
76.01
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152
ENSAPLT00000031068
148186524 - 148244055
57532