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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148203267_148204258_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148203267 - 148204258
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CTGAGCTAAACT
Flanking Amino Acid:
RAFRHTSTLAAMKLLTAVVG
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
87.5
0.84
0.7
84.9
29.9
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
48.5
-0
2.2
68.01
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031068
148186524 - 148244055
57532
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152