About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148205711_148206124_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148205711 - 148206124
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TATAATTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CATTTTATAATT
Flanking Amino Acid:
IFKGTFLSRYRDVIPEIRAT
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.4
0.57
0.9
68.7
41.3
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
58.1
0.33
1.6
73.1
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005763
148186524 - 148246675
60152
ENSAPLT00000031068
148186524 - 148244055
57532
ENSAPLT00000013826
148186524 - 148245027
58504