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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148225857_148226704_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148225857 - 148226704
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GATTTACTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
ATTTACTTACAG
Flanking Amino Acid:
LLKNDGGDREALNDAQKSAL
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
77.8
0.62
0.9
70
40.3
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
52.6
-0
2
64.33
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031068
148186524 - 148244055
57532
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152