Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148226809_148227250_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148226809 - 148227250

Intron Length:

442

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTCAGTGCG

5'SS Class:

major

3'SS Sequence:

GCTTTGTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GATTTTATAATT

Flanking Amino Acid:

PPAGRGAAKKILSVKEKKIQ

Intron Amino Acid Position:

566

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.9

0.45

1.3

63.5

41.4

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

79.4

0.66

0.9

37.4

Minor 5ss

30.1

-2.3

33.9

34.8

Minor BPS

59.2

0.37

1.5

74.34

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031068

148186524 - 148244055

57532

ENSAPLT00000013826

148186524 - 148245027

58504

ENSAPLT00000005763

148186524 - 148246675

60152