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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148227344_148227435_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148227344 - 148227435
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GCACTCATATCC
Flanking Amino Acid:
IMVLPQLLAKYSTDAQKVAN
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
89.2
0.88
0.6
84.8
22.9
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
44.3
-0.4
1.8
50.18
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152
ENSAPLT00000031068
148186524 - 148244055
57532