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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148230225_148231187_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148230225 - 148231187
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
TTTCCACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTTCCACT
Flanking Amino Acid:
AALRRIAAFHNAHDLTKWKL
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
0.9
71.3
35
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
84
0.76
0.8
77.9
29.6
Minor 5ss
35.9
-1.6
3.2
47.6
42.4
Minor BPS
58.1
0.34
2
83.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031068
148186524 - 148244055
57532
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152