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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148237538_148238853_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148237538 - 148238853
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTATCTTGGACT
Flanking Amino Acid:
ARALILCLQQLFQTCAESQD
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
86
0.81
0.7
80.6
30.6
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
69.4
0.69
1.4
84.69
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152
ENSAPLT00000031068
148186524 - 148244055
57532