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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148239009_148239127_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148239009 - 148239127
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TTTGTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTGTTTCAATA
Flanking Amino Acid:
KSRESVAMIHKEGIEFAFQG
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
34.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
77
0.61
0.9
74.3
35.3
Minor 5ss
41.8
-0.9
3
53.3
38
Minor BPS
58.2
0.25
1.6
70.41
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031068
148186524 - 148244055
57532
ENSAPLT00000013826
148186524 - 148245027
58504
ENSAPLT00000005763
148186524 - 148246675
60152