Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148243887_148244894_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148243887 - 148244894

Intron Length:

1008

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGGCG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAA

U12 Branch Point Sequence:

TTCTCAAGACTT

Flanking Amino Acid:

PLPCPGGLQQSESEIETDVS

Intron Amino Acid Position:

1162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

54.4

42.9

Major BPS

85.7

0.89

0.8

85.9

22.5

Major PPT

100

1.12

0.4

100

Minor 5ss

28.5

-2.5

3.6

39.1

46.2

Minor BPS

43.6

-0.4

2.1

66.92

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013826

148186524 - 148245027

58504

ENSAPLT00000005763

148186524 - 148246675

60152