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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148244986_148246666_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148244986 - 148246666
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TAATATGAGACT
Flanking Amino Acid:
ADVDVIDADQKS*
Intron Amino Acid Position:
1193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
37
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
68.8
0.42
1
62
44.4
Minor 5ss
40.6
-1.1
2.7
50.9
45.5
Minor BPS
41.3
-0.6
2.3
61.15
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005550
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005763
148186524 - 148246675
60152