About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148250036_148253595_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148250036 - 148253595
Intron Length:
3560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTTGCTCATTT
Flanking Amino Acid:
EEAASDQWNDGYEAELNPVD
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
75.4
0.57
0.9
69.9
35.5
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
52.3
0.15
2.2
79.99
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013503
148249845 - 148297265
47421