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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148259557_148261645_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148259557 - 148261645
Intron Length:
2089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGACAA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
RKDLARHNDHAISSRMIERI
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
62.3
37.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
37.5
-1.4
3
44.2
44.6
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013503
148249845 - 148297265
47421