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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148266639_148267183_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
148266639 - 148267183
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATATCTTTACAT
Flanking Amino Acid:
SVHKFVAMWRKILQTCYDDA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.6
0.71
0.8
78.2
34.6
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
60.3
0.4
1.7
76.48
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013503
148249845 - 148297265
47421