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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148267288_148269033_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148267288 - 148269033
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATACTTTAATT
Flanking Amino Acid:
TLDDMGKVAKACECPLYWKG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.5
0.53
0.9
67
37.7
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
76.8
0.92
1.1
85.9
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013503
148249845 - 148297265
47421