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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148269220_148296819_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148269220 - 148296819
Intron Length:
27600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTATCTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATATTTATCT
Flanking Amino Acid:
GARRSSGTRVVQAKKEETLP
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.2
42.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.4
0.66
0.9
78.6
34.9
Minor 5ss
39.7
-1.2
3
52
39.8
Minor BPS
56.7
0.29
1.8
74.73
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013503
148249845 - 148297265
47421