About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14833206_14836040_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14833206 - 14836040
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCGTAC
5'SS Class:
weak_major
3'SS Sequence:
TACTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TGTGACTGAAAT
Flanking Amino Acid:
IERIMSSYKEVTELAGYTAR
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
62.7
38.6
Major BPS
66.4
0.41
1
59
37.6
Major PPT
82.2
0.72
0.9
76.5
37.2
Minor 5ss
48.7
-0.1
2.9
66.9
44.7
Minor BPS
50.4
0.09
1.9
72.48
43.4

Associated Gene:

Gene:
ABCD2
Ensembl Gene ID:
ENSAPLG00000013822
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014434
14827376 - 14869131
41756