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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14836210_14839479_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14836210 - 14839479
Intron Length:
3270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
AAACATTAAACA
Flanking Amino Acid:
LHINGPLEIKGKVIDVEHGI
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
70.7
41.1
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
34.7
-1.7
2.6
34.2
41.4
Minor BPS
46.7
-0.2
1.8
54.56
37.3

Associated Gene:

Gene:
ABCD2
Ensembl Gene ID:
ENSAPLG00000013822
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014434
14827376 - 14869131
41756