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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148382421_148393957_F

Intron Information:

Intron Rank:
132627
Intron Class:
major
Intron Phase:
Intron Coordinates:
148382421 - 148393957
Intron Length:
11537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
TGTATTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ACTATCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
76.5
0.6
0.9
69.5
41.5
Minor 5ss
39.3
-1.2
2.9
51.9
44.9
Minor BPS
60.4
0.4
1.6
74.54
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021263
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023470
148382317 - 148396157
13841