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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14839575_14840984_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14839575 - 14840984
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTA
Flanking Amino Acid:
DVVVSRLNFKVEEGMNLLIT
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
0.9
71.3
38.8
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
65.6
0.49
1.8
80.59
35.2

Associated Gene:

Gene:
ABCD2
Ensembl Gene ID:
ENSAPLG00000013822
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014434
14827376 - 14869131
41756