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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148396122_148397919_F

Intron Information:

Intron Rank:
132626
Intron Class:
major
Intron Phase:
Intron Coordinates:
148396122 - 148397919
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGGA
5'SS Class:
major
3'SS Sequence:
CCTGTCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.4
40
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79
0.65
0.8
76.7
32
Minor 5ss
27.8
-2.6
3.6
38.3
46.7
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021263
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020982
148393903 - 148398271
4369