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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14841131_14858886_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14841131 - 14858886
Intron Length:
17756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTGCATTACCA
Flanking Amino Acid:
PPQHMFYIPQRPYMSIGTLR
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.8
0.72
0.9
76.8
37
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
52.5
0.07
2
68.02
44.4

Associated Gene:

Gene:
ABCD2
Ensembl Gene ID:
ENSAPLG00000013822
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014434
14827376 - 14869131
41756