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Intron Name: Anas_platyrhynchos_platyrhynchos_1_148489825_148510806_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

148489825 - 148510806

Intron Length:

20982

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCATG

5'SS Class:

strong_major

3'SS Sequence:

TAACCCTATACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

TAACCCTATACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.8

38.7

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

68.9

0.43

38.5

Minor 5ss

37.5

-1.4

47.8

47.9

Minor BPS

49.4

-0

63.06

42.7

Associated Gene:

Gene:

SHOX

Ensembl Gene ID:

ENSAPLG00000012938

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013462

148489502 - 148520597

31096