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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148511176_148513960_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148511176 - 148513960
Intron Length:
2785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
TTCCCCTTCCCC
Flanking Amino Acid:
KEFAAGRTAEGIYECKEKRE
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
72.5
37.3
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
65.6
0.35
0.9
61
29.2
Minor 5ss
30.7
-2.2
3.3
39.2
46.2
Minor BPS
42.7
-0.5
3.6
67.59
44.2

Associated Gene:

Gene:
SHOX
Ensembl Gene ID:
ENSAPLG00000012938
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013462
148489502 - 148520597
31096