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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148518440_148518528_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148518440 - 148518528
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCAGG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TATTGCTCACCC
Flanking Amino Acid:
CRKQENQMHKGVILGTASHL
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.7
46.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
31.9
-2.1
3.1
39.2
46.3
Minor BPS
49
-0
2.2
67.81
43.6

Associated Gene:

Gene:
SHOX
Ensembl Gene ID:
ENSAPLG00000012938
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013462
148489502 - 148520597
31096