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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148552536_148552618_R

Intron Information:

Intron Rank:
139466
Intron Class:
major
Intron Phase:
Intron Coordinates:
148552536 - 148552618
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGAA
5'SS Class:
major
3'SS Sequence:
TGTTTGCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTGTCAGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.3
36.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72.1
0.5
1
67
39.6
Minor 5ss
21.7
-3.3
3.4
27.5
44.3
Minor BPS
53.1
0.18
2.3
76.77
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028832
148552390 - 148569593
17204