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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148567684_148568345_R

Intron Information:

Intron Rank:
139469
Intron Class:
major
Intron Phase:
Intron Coordinates:
148567684 - 148568345
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATGTTGTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
74.8
0.56
0.8
73.5
29.9
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
48.4
-0.1
2.2
63.79
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046894
148567520 - 148569593
2074