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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148588585_148589119_F

Intron Information:

Intron Rank:
135078
Intron Class:
major
Intron Phase:
Intron Coordinates:
148588585 - 148589119
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTTC
5'SS Class:
major
3'SS Sequence:
CCTTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TAAGCTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
74.9
36.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.8
0.69
0.8
73.7
35.5
Minor 5ss
46.3
-0.4
2.5
61.6
43.2
Minor BPS
61.2
0.35
1.5
66.7
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022669
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028798
148588485 - 148593133
4649