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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148589207_148591567_F

Intron Information:

Intron Rank:
135079
Intron Class:
major
Intron Phase:
Intron Coordinates:
148589207 - 148591567
Intron Length:
2361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
GTTCTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCCATGTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.7
40.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.3
0.7
0.7
80.7
31.3
Minor 5ss
39.1
-1.2
3
46.8
42.6
Minor BPS
49.4
-0
2.1
70.95
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022669
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028798
148588485 - 148593133
4649