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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148591702_148593031_F

Intron Information:

Intron Rank:
135080
Intron Class:
major
Intron Phase:
Intron Coordinates:
148591702 - 148593031
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
TCTCTCATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTCTCCTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
64.2
41.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.3
0.53
1
69.8
35.2
Minor 5ss
34.5
-1.8
3.4
44.4
44.5
Minor BPS
70.8
0.63
1.7
75.07
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022669
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028798
148588485 - 148593133
4649