About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148594506_148595090_F

Intron Information:

Intron Rank:
137758
Intron Class:
major
Intron Phase:
Intron Coordinates:
148594506 - 148595090
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GAATTCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.3
0.5
0.9
65.7
40.5
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
71.5
0.75
1.4
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024188
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038207
148594500 - 148596142
1643