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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14866615_14868920_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14866615 - 14868920
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTTCTGATTT
Flanking Amino Acid:
LLSITHRPSLWKYHSHLLQF
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.3
0.48
1
66.3
39.2
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
52.7
0.16
1.7
70.6
40.9

Associated Gene:

Gene:
ABCD2
Ensembl Gene ID:
ENSAPLG00000013822
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014434
14827376 - 14869131
41756