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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14883626_14925669_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14883626 - 14925669
Intron Length:
42044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACT
5'SS Class:
major
3'SS Sequence:
TCTTCTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTCTTAAACA
Flanking Amino Acid:
PKSRNGSKSARIRPQLAKEK
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
76.5
38.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.5
0.6
0.9
73.6
34.7
Minor 5ss
33.3
-1.9
2.9
44
43.3
Minor BPS
70.5
0.64
1.6
78.6
38.6

Associated Gene:

Gene:
KIF21A
Ensembl Gene ID:
ENSAPLG00000014318
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045930
14883243 - 14983050
99808
ENSAPLT00000039698
14883243 - 14983050
99808
ENSAPLT00000034605
14883243 - 14983050
99808
ENSAPLT00000033948
14883243 - 14983050
99808