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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148922469_148927515_R

Intron Information:

Intron Rank:
141211
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
148922469 - 148927515
Intron Length:
5047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
GGGGAACACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTTCCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
48.5
-0
1.1
35.9
39.5
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
47.9
-0.3
2
60.73
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031099
148918626 - 148927923
9298