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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148994606_148996825_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148994606 - 148996825
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
TGATTATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTGTGATT
Flanking Amino Acid:
ETFWMNGTLLDSCDDDLKSQ
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.5
0.46
0.9
62.8
43.1
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
57
0.3
2
81.5
34.7

Associated Gene:

Gene:
CRLF2
Ensembl Gene ID:
ENSAPLG00000004683
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026931
148991506 - 149006404
14899
ENSAPLT00000004813
148991506 - 149006665
15160