Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_148997849_148999971_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

148997849 - 148999971

Intron Length:

2123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

CTTTTCTTCTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATTGCATGACT

Flanking Amino Acid:

FSKILKSDFYIKPSPPENVT

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

77.3

37.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

84.9

0.78

0.6

84.7

Minor 5ss

41.2

-1

2.8

53.2

38.8

Minor BPS

57.6

0.32

2.1

81.39

Associated Gene:

Gene:

CRLF2

Ensembl Gene ID:

ENSAPLG00000004683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026931

148991506 - 149006404

14899

ENSAPLT00000004813

148991506 - 149006665

15160