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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149018236_149022750_R

Intron Information:

Intron Rank:
151407
Intron Class:
major
Intron Phase:
Intron Coordinates:
149018236 - 149022750
Intron Length:
4515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGGGCT
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
AAGCACAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
64.6
38.4
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
89.5
0.89
0.6
88
22
Minor 5ss
30
-2.3
3.8
38.5
46.7
Minor BPS
43.4
-0.4
2
59.51
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029006
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039595
149017784 - 149033361
15578