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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149046957_149050940_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149046957 - 149050940
Intron Length:
3984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ACATTATTAACA
Flanking Amino Acid:
DWSEPVIIHDGKTVDIMLLS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
77
0.61
1
82.4
26.6
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
61.8
0.37
1.6
67.52
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004823
149042589 - 149062557
19969