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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149057596_149060579_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149057596 - 149060579
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTGTGCTTATTT
Flanking Amino Acid:
YYKALLPQKIEKLNPPINVS
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
52
0.14
2.1
71.02
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004823
149042589 - 149062557
19969