About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149060768_149060906_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149060768 - 149060906
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTATCTACAACA
Flanking Amino Acid:
PADIQIFFSYRQTGKYFECQ
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
77
0.61
0.9
73.3
31.8
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
58
0.25
1.8
73.79
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004823
149042589 - 149062557
19969