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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149061016_149061602_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149061016 - 149061602
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTAT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
WTECTYKAPPVYIQNLSCII
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
76.7
34.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
43.4
-0.7
2.6
58.3
46.3
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004823
149042589 - 149062557
19969