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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149062013_149062357_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149062013 - 149062357
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTCATTATAATT
Flanking Amino Acid:
GLANGQPDVVDELGLHNDLQ
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.2
0.57
1
67.9
41.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
49.4
0.04
1.6
65.53
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004692
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004823
149042589 - 149062557
19969