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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149066334_149073110_R

Intron Information:

Intron Rank:
132904
Intron Class:
major
Intron Phase:
Intron Coordinates:
149066334 - 149073110
Intron Length:
6777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAG
U12 Branch Point Sequence:
CATGTATTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
67.8
0.44
1.5
75.9
36.3
Major PPT
71.7
0.49
0.9
65.8
36.1
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
46.8
-0.2
2
56.71
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018728
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034052
149065850 - 149073953
8104