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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149113913_149115931_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149113913 - 149115931
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TGAAAATAAACC
Flanking Amino Acid:
AADNEKAIIKAVDMTCIFDG
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
83.7
0.76
0.8
80.8
36.5
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
44.2
-0.4
2
55.59
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029413
149113505 - 149126859
13355
ENSAPLT00000025738
149100515 - 149122527
22013