About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149119656_149121226_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149119656 - 149121226
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTCTCAATT
Flanking Amino Acid:
FKYEVKITYKGNSGEEVVHT
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
80
0.75
1
78.6
31
Major PPT
79.7
0.67
0.9
72.6
36.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
76.7
0.92
1.4
91.82
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029413
149113505 - 149126859
13355
ENSAPLT00000025738
149100515 - 149122527
22013