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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149125420_149126589_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149125420 - 149126589
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTACAAAACT
Flanking Amino Acid:
FNGQHDINPELMECKMQSIT
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84
0.77
0.7
81.8
29.4
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
48.6
-0
2.1
72.48
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030883
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029413
149113505 - 149126859
13355