About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149140698_149140861_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149140698 - 149140861
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTAACCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGTTCTTTAACC
Flanking Amino Acid:
PLHADLQRIERICSAETEES
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
68.8
43.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
68
0.4
1
67
40
Minor 5ss
34.8
-1.7
2.8
37.9
40
Minor BPS
85.6
1.1
0.9
87.16
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035943
149140580 - 149153521
12942