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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149145628_149146759_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149145628 - 149146759
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CATTCCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTACATTAATT
Flanking Amino Acid:
YDEYIELCEIERLTPPLNVS
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.9
66.7
39
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
67.6
0.63
1.6
81.97
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035943
149140580 - 149153521
12942