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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_149146900_149149217_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149146900 - 149149217
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
AAATCATAAAAA
Flanking Amino Acid:
FTYEINIQNKGEHDKDKKDP
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
71.6
0.54
1
72
33.1
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
47.5
-0.1
2
58.96
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035943
149140580 - 149153521
12942